42: Optic Tectum Decision

The key element of decision making is the commitment to an action: all-or-none, both sustaining a decision and locking out competing action. In contrast, the choice part of decision-making is less important. Even a simple random choice or first choice is an effective decision mechanism, but losing out the all-or-none means the decision isn’t a decision. The key is ensuring that once a choice is made, the animal sticks to that choice. The losing action should not interfere with the winner. Specifically a decision suppresses dithering: switching between competition actions [Redgrave et al 1999].

This essay uses wall-following from essay 41 as the decision. If the animal detects a wall to the right, it will follow that wall for a time, improving search over random walk by reducing the search to a single dimension. In this case, the choice is left or right, which particularly matters because the choice requires communication between the two sides, which requires specific circuits because commissures are relatively rare.

Decision: two-phase commit

Decision-making has two main components: the choice (preparation) and commitment. A decision that doesn’t sustain or that doesn’t lock out competing stimuli isn’t a decision. Decision-making can split into a preparation / selection phase, which compare options — taking time if necessary, followed by a commit winner-take-all phase where the winning action goes forward and any losing action is locked out.

Decision as a two-phase process

Most decision research is focused on the preparation phase because people are interested in choosing A vs B, and much less research on the commitment implementation, the timeout and lock-out. For the essay simulation, the commitment is more important and needs to be implemented first. Without the commitment, a losing option can continually interrupt the animal, distracting it from its goals. The requirements for commitment are something like:

  • Sustain
  • Timeout: prevent the sustain from becoming perseveration
  • Lockout: prevent competing actions

Orientation and wall-following

For a decision, this essay uses wall-following (thigmotaxis), continuing from essay 41. Wall-following needs to be treated as a decision beyond a single swimming cycle. Consider the alternative where a lateral-line sense is a simple sensory-action reflex for each swimming cycle. Without a longer conception of the decision, the animal can’t avoid perseveration: it would circle a pillar or a convex arena endlessly. Any timeout needs to curtail wall-following, not right turns. Similarly, without persistence the animal might alternate left and right wall-following in a crowded environment, where both the left and right lateral-line indicates obstacles. Of the two, the timeout issue is more critical, but the ability to continue an action, is necessary to enable a “win-stay” strategy.

Because the research hasn’t located the circuit for wall following, these essays need to choose a brain location for it. The previous essay proposed R1.a (anterior hindbrain) as the driver of thingmotaxis, but an alternative uses OT (optic tectum) as an orientation center for thigmotaxis. Because OT receives lateral-line input via M.ts (torus semicircularis / inferior colliculus) [Zeymer et al 2018], it has the sensory information needed to turn toward a wall. OT is known as an orientation center. When a surprising or salient sensation appears, the animal turns toward it. If we imagine the proto-vertebrate as non-cortical, then that orient is likely OT. Even in mammals with a strongly developed cortex that can provide orientation functionality, OT is perhaps the strongest [Schall 2019].

Two architectures for orientation decisions. On the left, the orientation sustains its own decisions and is directly modulated by timeout. On the right, a separate module is responsible for sustaining the decision, possibly incorporating motor efference copies as part of the sustain system.

One immediate question is if the orientation also implements sustain. Compare the left and right model. In the left model, the orientation system implements sustain itself, driving and sustaining a turn action. The right model has a distinct sustain system, which may be driven by motor efference copies. The known connectivity of OT could support either model.

OT has independent sustaining capabilities, in part due to sodium channel modulation [Ghitani et al 2016], [Thompson AC and Aizenman 2023]. OT also has a loop with T.pf (parafascicular thalamus) and S.d (dorsal striatum), which can implement the timeout using A2a.s (adenosine G-s coupled stimulatory receptor) and adenosine accumulation. Although the left model is possible, several studies report OT burst neurons activate at the decision point [Lintz et al 2019], [Stine et al 2023], with ramping neurons before the decision and action [Munoz and Wurtz 1995], [Lintz et al 2019], not after the decision, suggesting the model on the right. Ppt (pedunculopontine tegmental nucleus) is well-suited as a central node of the sustain role. Ppt maintains activity from one decision to another in tasks that repeat decisions [Thompson JA et al 2016]. It also receives widespread input from hindbrain motor areas, including R1.a and R5.my.gi (medulla giganocellular chx10 turning neurons) [Huerta-Ocampo et al 2021].

If wall-following uses the midbrain orientation circuitry, then a combination of OT and Ppt is plausible following the model on the right. Note, though, that the sustain may not be only Ppt, but could also include other anterior hindbrain systems like R1.a, V.rn (serotonin Raphé nuclei), and possibly R.ip (interpeduncular nucleus), because all of these are associated with brainstem sustained attention network [Alves et al 2022].

S.nr tri-value logic

S.nr (substantia nigra pars reticulata) is a key player in commitment. S.nr provides tonic suppression over essentially every voluntary action. For this essay, consider S.nr as a tri-value logic. The tonic, middle level of S.nr allows ongoing actions to continue, but inhibits starting a new action. A low S.nr value, the classic disinhibition model, allows new actions to start. A high S.nr value stops ongoing actions. The tonic level itself might be adjustable. For decision-making, this tri-value S.nr can support the commitment requirements of sustain, timeout (Stop), and lockout (passive inhibition with overriding Go).

S.nr as a tri-value system. The tonic activation allows sustain of an ongoing action. A Go signal disinhibits an action, allowing it to start. A Stop signal inhibits an ongoing action.

In the diagram above, the tonic S.nr inhibits new actions, but ongoing actions would continue, or a sufficiently strong sense input could start an action. An explicit Go signal would allow a weak sensory input to start an action. An explicit Stop signal would stop all action, regardless of the sense strength. The adjustable tonic level can be influenced by sleep and wake pressure, since S.nr.m is associated with sleep [Liu D et al 2020]. As the animal grows tired, a higher tonic S.nr would discourage new actions and encourage stopping of sustained actions, but the sleep pressure would not outright prevent action.

In the context of decision commitment, disabling S.nr eliminates orientation selectivity: mice are unable to resist orienting to any object in the whisker field [Redgrave et al 1999]. In PD (Parkinson’s disease) an overly-active S.nr produces bradykinesia (slow movements) and akinesia (lack of voluntary movement), and inhibiting S.nr can reduce akinesia and bradykinesia [Hu Y et al 2023], [Lin C et al 2024]. However, an underactive S.nr can produce dyskinesia (twisted postures) where opposing actions activate at the same time, and stimulating S.nr can reduce dyskinesia [Hu Y et al 2023].

Action sustain and timeout

An immediate consequence of commitment is timeout. Without a timeout, an unending commitment can lock an animal into a decision forever. A previous essay already covered a possible timeout circuit using adenosine as a timing neurotransmitter. The S.d2 (striatum with D2 dopamine-receptor) projection neuron have A2a.s (adenosine G-s coupled stimulatory) receptors, and some studies use A2a.s receptors to identify the S.d2 neurons as S.a2a as opposed to the S.d2 convention in the essays. Adenosine builds up around active neurons, partially produced by astrocytes that monitor glutamate activity [Ma et al 2022]. This adenosine progressively activates S.d2 neurons, which stops action using the indirect path.

Basal ganglia timeout circuit. Ongoing left wall-following provides an efference copy to S.d2. As time continues, adenosine enables S.d2, and eventually activates the indirect path to stop the left action. H.stn (subthalamic nucleus), P.ge (globus pallidus, external), S.d2 (striatum D2-receptor projection neuron), S.nr (substantia nigra pars reticulata), T.pf (parafascicular thalamus).

The above diagram shows a possible timeout circuit for thigmotaxis following a left wall. During the left wall-following, an efference copy via T.pf (parafascicular thalamus) drives glutamate to S.d2 in the striatum. Sustained glutamate in S.d2 produces adenosine, which progressively activates S.d2, which then inhibits the current action using the indirect path of P.ge (external globus pallidus) to H.stn (subthalamic nucleus) to S.nr to stop the left action.

Note that the P.ge / H.stn circuit is complex and oscillatory. This path isn’t necessarily a straight chain as the above diagram would suggest. For example, S.d2 to H.stn / P.ge can switch the mode from irregular, unsynchronized firing to a regular oscillation [Terman et al 2002], or switch from a gamma (~80Hz) to a beta (~20Hz) frequency [Wang Y et al 2024].

Interrupting sustained action

Sometimes sustained actions need to be interrupted, either for dramatic reasons like a predator attack or more mundane situations like stubbing a toe. These interrupts need to be fully general, halting the current action, no matter which action path happens to be active. Note the similarity to sleep, where sleep needs to halt any action.

Two ways of halting action are either a direct halt signal or a deadman’s switch. In a deadman’s switch, a tonic signal maintains normal behavior, and the absence of the signal stops the action. The brain uses this pattern with several instances of high-affinity Gi (G-protein coupled inhibitory) receptors that saturate in normal, tonic activity, but disengage when the neurotransmitter drops. In particular the D2.i (dopamine G-i inhibitory) receptor is high affinity, quickly saturating, that is fully active at normal tonic levels of dopamine and only shuts off when dopamine levels drop.

Adding a dopamine deadman’s switch to the timeout circuit. An interruption drops DA, which immediately activates the timeout circuit from S.d2. H.stn (subthalamic nucleus), P.ge (external globus pallidus), S.d2 (striatum D2 projection neuron), S.nr (substantia nigra pars reticulata), T.pf (parafasciculus thalamus), V.da (midbrain dopamine), V.rmtg (rostral medial tegmentum).

The diagram above adds a dopamine deadman’s switch to the timeout circuit. Tonic dopamine from V.da (midbrain dopamine) normally inhibits S.d2, allowing for a normal timeout. Because D2.i is a high affinity receptor, a low tonic level of dopamine activates it and quickly saturates the receptor. When dopamine drops below a threshold, the D2.i receptor will deactivate and disinhibit the S.d2 neuron, which rapidly fires the timeout using the indirect path, stopping the action. Dopamine will drop if V.rmtg (rostromedial tegmental) activates. V.rmtg is activated by pain or itch sensations and by many more general failure or disappointment systems.

Lockout and the Sprague effect

The commitment phase needs to lockout alternative distractors. I haven’t found any research on this specific scenario. Decision research generally studies artificial forced-choice scenarios, where each choice is separated by several seconds from another choice, and is forced by a single decision point, like a T-maze or Y-maze, or turning left or right from a central cue port. The design of the typical experiment removes the scenario of sequential, continuous choices. Because of the lack of direct studies, the following discussion is more speculative. Attention is a related, but distinct research area to decision-making. Sustained attention is similar to this commitment issue.

The Sprague effect is related to OT attention. In mammals OT receives excitatory input from C.vis (visual cortex). If the left C.vis is lesioned, the animal will ignore items in contralateral, right visual field. Paradoxically, a following lesion to contralateral, right OT will restore attention to the left visual field [Gambrill et al 2018], [Gebhardt et al 2019], [Jiang et al 2003], [Krauzlis et al 2013]. Further studies have shown this effect with the second lesion to the tectal commissure [Gambrill et al 2018] or to the specific area of contralateral S.nr [Krauzlis et al 2013] or to the entire contralateral Ppt [Valero-Cabré et al 2020].

In frogs there is a direct OT to contralateral OT connection. Unilateral OT legion impairs bilateral visual behavior regardless of looming direction [Gambrill et al 2018]. In contrast unilateral OT lesion deficit in behavior only in lesioned hemifield [Gambrill et al 2018].

Possible Sprague effect circuit, showing lockout of contralateral wall-following. OT.d (deep layers of optic tectum), Ppt.a (anterior pedunculopontine tegmental nucleus), Ppt.p (posterior Ppt), S.nr (substantia nigra pars reticulata).

This above diagram shows a potential circuit for the Sprague effect. (For simplicity, straightening out crossed output to the motor.) Once a decision to follow a right wall has been made, the ongoing motor action sends an efferent copy to Ppt [Caggiano et al 2018], which projects to S.nr [Durmer and Rosenquist 2001], which inhibits the contralateral OT.d [Durmer and Rosenquist 2001]. Similarly, a motor efferent copy to Ppt also projects to the ipsilateral OT.d [Valero-Cabré et al 2020], which enhances attention to continue following the right wall.

This Ppt sustained attention circuit is similar to the R.is (nucleus isthmus / parabigeminal) circuit in fish [Henriques et al 2019] and birds [Marín et al 2007], covered in essay 19. Like Ppt, R.is has both ACh and GABA components, although in Ppt the components are mixed salt-and-pepper, while R.is has distinct nuclei. Ppt and R.is are sibling areas, both generated from the same progenitors in R1 (hindbrain rhombomere 1), but one is generated before the other [Morello et al 2020]. R.is is better understood because it has simpler connectivity than Ppt. When zebrafish hunt paramecia, R.is sustains attention to a target prey and inhibits attention to other visual areas [Henriques et al 2019]. R.is provides a similar effect in birds [Knudsen 2011], [Marín et al 2007], [Mysore and Knudsen 2011], [Reynaert et al 2023].

Although Ppt has much more complicated connectivity and function, like R.is, it has reciprocal connectivity with OT. Ppt is also active during actions, and it highly heterogenous, and connected with much of the hindbrain motor, both R.pn (pons, anterior hindbrain) and R.my (medulla, central and posterior hindbrain). Like R.is, Ppt proves ACh attention to OT [Isa et al 2021], [Mena-Segovia et al 2008], [Mena-Segovia et al 2017], [Krauzlis et al 2013], [Wolf et al 2015] and as the Sprague studies show, it inhibits the contralateral OT via S.nr.

At the time of choice, many Ppt reflect previous action and outcome. Ppt lesions reduce influence of recent experience on action selection. The Ppt ACh input to OT is possible as a Bayesian prior [Thompson et al 2016].

Passive lockout

An alternative to an active of alternative actions is a passive lockout, which inhibits actions without needing input from a sustain system. Once an action commits, the passive lockout prevents new action. A possible passive lockout involves the H.stn / P.ge pair, which is hyperactive in PD. Akinesia like PD is exactly what’s needed for passive lockout.

H.stn / P.ge as a passive lockout system. H.stn (subthalamic nucleus), P.ge (external globus pallidus), S.nr (substantia nigra pars reticulata).

In the above circuit, H.stn and P.ge form a spontaneously oscillating circuit at beta frequencies. In PD, this circuit is hyperactive, oscillating at beta frequencies, providing broad movement inhibition [Fischer et al 2017]. This circuit drives S.nr, which inhibits the action.

This description vastly oversimplifies the P.ge / H.stn circuit. The P.ge / H.stn circuit can operate in at least two modes: inhibitory at beta frequencies (H.stn exciting S.nr), and excitatory at gamma (P.ge inhibiting S.nr) [Fisher et al 2017], [Terman et al 2002]. H.stn also has distinct subregions, with H.stn.vm (venture-medial) as almost an extension of H.l [Haynes and Haber 2013], while H.stn.l as distinct functionality [Baunez and Lardeux 2011], [Pasquereau and Turner 2017].

Studies seem to divide on whether H.stn is suitable for a commitment function. H.stn activity terminates at onset of movement [Espinosa-Parrilla et al 2013], which would argue against passive lockout. H.stn gamma increases during movement for humans [Fischer et al 2017], but others point out that H.stn beta are brief bursts, not sustained [Feingold et al 2015], and H.stn beta in humans is active for acute stopping [Wessel et al 2016].

A second passive lockout is in the striatum itself, discouraging new actions by default. S.pn (striatum projection neurons), both S.d1 (D1 receptor S.pn) and S.d2, are hyper polarized, making them harder to drive than most neurons. Secondarily, new actions are inhibited by the feedforward, fast-spiking S.pv (parvalbumin) neurons, which inhibit S.d1 and S.d2 before they can be activated. S.pv activates before S.d1 and S.d2 [Gage et al 2010], [Lee C et al 2019], [O’Hare et al 2017], [Yim et al 2011].

Striatum passive lockout using the inhibitory S.pv neurons. Once an action starts, an endocannibinoid sub circuit disinhibits the action, allowing sustained activity. eCB (endocannibinoid neurotransmitter), S.d1 (striatum D1-receptor neurons), S.d2 (striatum D2-receptor neurons), S.pv (striatum parvalbumin inhibitory neuron), T.pf (parafascicular thalamus).

This S.pv inhibition is suppressed by sustained action using a retrograde eCB (endocannabinoid) system that disinhibits both S.d1 and S.d2 by inhibiting GABA release from S.pv [Narushima et al 2006], [Adermark et al 2009], [Mathur and Lovinger 2012].

Active initialization

A passive lockout system needs to be paired with an active initialization. If new actions are passively inhibited by default, a new action needs extra effort to cross the barrier. Possible active initialization nodes include OT, Ppt, as well as the S.d1 direct path.

The following diagram shows a possible active initialization. The passive lockout subcircuit is the same as before. The active initialization would logically use the S.d1 path. Phasic dopamine activates the Go path, both by enabling the S.d1 input and their output, because D1.s receptors are on inputs to S.d1 and on the axons in S.nr, which enables the direct path to disinhibit the S.nr.

Explicit active Go circuit to override the passive lockout circuit. H.stn (subthalamic nucleus), LL (lateral-line), OT (optic tectum), P.ge (external globus pallidus), Ppt (pedunculopontine tegmentum), S.d1 (D1-receptor striatum), S.nr (substantia nigra pars reticulata), T.pf (parafascicular thalamus), V.da (midbrain dopamine).

This Go circuit is for wall-following, which uses the lateral-line as a wall distance sensor. The lateral line sense is input to the OT orientation circuit, which excites both the S.d1 path via T.pf and the V.da path, which will add a phasic DA burst to enhance the S.d1 circuit, giving it an extra boost to overcome the barriers.

Note that OT / Ppt also inhibits contralateral OT as described in the Sprague effect system, and the OT to V.da excitation is ipsilateral, but OT also inhibits the contralateral V.da via V.rmtg [Pradel et al 2021]. So this circuit is also part of the active lockout system.

Consider the striatum passive lockout circuit again, which discouraged new actions but enabled sustained actions. That passive lockout implies the necessity of an extra push for new actions. Phasic dopamine bursts could provide that extra push. A burst of dopamine activates the low-affinity D1.s receptors in S.d1, allowing S.d1 to override its intrinsic hyperpolarization and the feedforward S.pv inhibition and initiate a new action.

Striatum passive lockout circuit with sustain from eCB disinhibition and new actions enabled by DA burst. DA (dopamine), eCB (endocannabinoid), S.d1 (D1-receptor striatum projection neuron), S.d2 (D1-receptor striatum projection neuron), S.pv (striatum parvalbumin inhibiting interneuron), T.pf (parafascicular thalamus).

Pretectum suppression of OT

This essay uses the aquatic-only lateral-line for thigmotaxis. Thigmotaxis is an interesting system because the animal must be weakly attracted to the wall but simultaneously repelled by the wall to avoid collision. M.pt (pretectum) is an obstacle avoidance system in the midbrain and OT is an orienting system. In non-mammalian vertebrates (reptiles, birds, frogs), the striatum projects directly to M.pt, which inhibits OT [Krauzlis et al 2018]. If the animal gets too close to the wall, M.pt should inhibit the OT orientation and avoid the wall, but if the animal is far enough from the wall, it should approach the wall with thigmotaxis, suppressing the avoidance circuit.

Thigmotaxis balancing attraction from OT orientation and avoidance from M.pt obstacle avoidance. LL (lateral line), M.pt (pretectum), OT (optic tectum), S (striatum), T.pf (parafascicular thalamus).

The above circuit shows this potential thigmotaxis circuit. Normally, M.pt avoids the wall and suppresses OT to keep any OT orientation from running into the wall. But during thigmotaxis, the S circuit will suppress M.pt to allow the animal to get closer to the wall.

Simulation

The simulation divides thigmotaxis into several systems. An obstacle system roughly corresponds to M.pt and keeps the animal from running into a wall. An orientation system provides an attractive drive toward the wall. These two systems are now designed as independent and general, where sensory input is external. For example, the lateral line drives both the obstacle and orient systems, but the code for obstacle and orient systems are ignorant of the lateral line itself.

Outline of simulation modules for lateral-line thigmotaxis.

The decision commitment uses a loop with a sustain module and a striatum module. The sustain roughly corresponds to Ppt with possible associated areas like V.dr and R1.a, because the simulation is more abstract than directly implementing each neural ganglia. The striatum module provides with timeout function with an adenosine-lie timeout. The sustain also provides an active inhibitory lockout function, following the Sprague effect studies.

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Essay 41: Thigmotaxis

Thigmotaxis is wall-following locomotion, as opposed to random-walk exploring open areas. Thigmotaxis is almost entirely studied as an indicator of anxiety, under the model that anxiety is driven by distant, learned fear. Under this model, wall-following is driven by trying to avoid threat. However, for this essay I’m treating thigmotaxis as a navigational strategy, an addition to the random walk, area-restricted search, and targeted seek that previous essays have simulated. Because thigmotaxis is essentially never studied in itself (or at least I haven’t found any studies yet), even the regions that implement thigmotaxis is not studied.

Simulated thigmotaxis

Because I haven’t found research into the underlying mechanisms of thigmotaxis, the following motivation and implementation is speculative, but may be useful in exploring the non-defensive value of thigmotaxis.

When navigating a maze, wall-following using the right hand rule is a highly effective technique. Although this simple rule doesn’t work on all mazes, it works on a large number. Importantly, even a simple nervous system could implement this rule, since this technique doesn’t require any memory. The following screenshot shows some of the searching value of thigmotaxis.

Simulation of thigmotaxis behavior showing an animal navigating a maze using wall-following techniques.
Screenshot of thigmotaxis where the animal follows the wall to the right to explore an island in the maze.

In the screenshot above, the animal is turning using thigmotaxis to explore the isolate island. A random walk about bound off the island and spend more time in open areas. Similar, wall-following naturally moves from section to second in the rest of the maze, such as following the corridor between the main areas to the left and right. In contrast, while random motion can also cross the passage if the trajectory happens to match, the probability is lower. Wall-following will always read the new section, but random search will only probabilistically have the proper trajectory to enter.

State and stateless thigmotaxis

For thigmotaxis, using the lateral-line sense seems to be the most direct with fewest requirements. Lateral-line is a new sense in vertebrates not present in tunicates, the closest non-vertebrates. The lateral line sense is a series of hair cells that measure water flow around the animal. This sense detects nearby objects and obstacles like a passive sonar at a distance approximately the animal’s own length. The lateral line sense has disjoint head and trunk systems and is lateralized into distinct left and right. The essay simulation approximates the lateral line by combining sense data points into these four combined areas with no finer details to approximate the information available to a simple proto-vertebrate.

A simple, stateless thigmotaxis tries to keep the head lateral-line in a middle range. If the head is too far from the wall, the animals turns toward the wall. If the head is too near the wall, the animal turns away from the wall. Because the lateral-line sense is lost beyond the animal’s own length, if the head loses the signal but the trunk still senses a wall, the animal can turn toward the trunk side to regain a head sense.

Stateless thigmotaxis is likely to lose the wall if the animal doesn’t turn quickly enough or the wall changes are too sharp, as in the post-like wall in the above screenshot. In the simulation, stateless thigmotaxis very quickly loses the wall and almost never follows sharp turns. In the animal loses the wall, thigmotaxis turns off and the animal reverts to random walk. Adding state to the system remembers the wall’s side. Even a short memory like a second or two can improve thigmotaxis performance. If the animal is following a wall to the right as above and the lateral line sense is lost, but the animal remembers that the wall is on the right, it can turn right, most likely restoring contact with the wall.

Based on running the simulation, short term memory is likely important to thigmotaxis, almost as important as the distance sense itself. In trying to understand which brain area might implement thigmotaxis, having access to simple short term memory is likely important.

Improving ascidian cement-gland search

As several essays have covered, the ascidian tunicate larva searches for a permanent adult filter-feeding settling place with a combination of phototaxis and geotaxis. When the ascidian larva finds a landing spot, it will attach with a cement gland. Geotaxis drives the ascidian larva up and phototaxis drives it away from light [Anselmi et al 2024]. This combination prefers overhanging ledges, which are both dark and upward, but the animal will settle on flat ground if it can’t find a ledge. This cement gland and phototaxis combination still exists in some fish and amphibian tadpoles. Consider a proto-vertebrate that adds thigmotaxis to this cement-gland strategy. Because the thigmotaxis animal spends more time near walls than random search would, it’s more likely to find an overhand.

As a search strategy, thigmotaxis could improve over random walk if the search target is near walls. In a reef-like ecosystem, better food sources might be near the reef and more marginal feeding in open sand. Along with potential improved defense of sticking near walls, thigmotaxis may improve search, both by preferring richer areas near walls or reefs, and improving maze-like navigation, where the maze here is the reef itself.

Arguments against thigmotaxis

There is an argument against thigmotaxis as a specific locomotor strategy, increase arguing that thigmotaxis is an epiphenomenon [Horstick et al 2016]. Circular arenas are common in scientific experiments. In a circular arena, the animal will appear to stick to the wall if the animal simply moves forward ballistically while avoiding barriers. The diagram on the left below shows this illusionary thigmotaxis. In contrast, the diagram on the right shows genuine thigmotaxis, where wall-following is needed to produce the trajectory.

Diagram comparing two maze navigation strategies: thigmotaxis (left) and a circular path (right).
Illusionary thigmotaxis on the left, where wall-following appears from a combination of ballistic motion and obstacle avoidance. In contrast, the right shows actual thigmotaxis where wall-following is necessary to produce the trajectory.

In a mouse experiment (that I can’t find the reference to), driving MLR (midbrain locomotor region), a low-level locomotor area, drives the animal forward, but obstacle avoidance keeps the animal from running into the walls. The resulting path is circular, running around and around the experimental area following the walls, which appears exactly as thigmotaxis, but in this case there is not thigmotaxis system at all. The apparent thigmotaxis is an epiphenomena from the combination of the shape of the arena, forward motion, and wall avoidance.

Note that the epiphenomenon depends on the arena shape [Horstick et al 2017]. If part of the arena is convex instead of concave, the ballistic motion will avoid the wall, bound off it, and the apparent thigmotaxis will disappear. The screenshot above shows that situation, where a distance thigmotaxis system is required to follow the wall.

Motor-driven taxis

Since I can’t find any direct thigmotaxis study, using related studies seems like the best approach. Thermotaxis is the avoidance of too-hot or too-cold areas. In fish the Hb.d (dorsal habenula; Hb.m in mammals) to R.ip (interpeduncular nucleus in the anterior hindbrain) circuit is central to thermotaxis [Paoli et al 2025]. This thermotaxis is movement-driven, as opposed to sensory-driven. Movement organizes the circuit. When the fish turns to the right, the circuit remembers the movement direction, and if heat increases, the circuit determines that heat is toward the right. The circuit needs two pieces of state. First is needs to remember that it turned to the right for a second or two. If the temperature increases, the circuit now knows the hotter area is toward the right. The second memory saves the “right is too hot” for a few seconds so the animal can avoid the right side. The important thing here is that a motor efference copy drives the hold system. The system is motor-driven with a coincidence detection of the motor turn with a sensory change.

The specific brain area for this thermotaxis circuit is the anterior hindbrain. The motor detection is in R1.a (anterior hindbrain, rhombomere 1) in the R1.dta (dorsal tegmental area). The thermal gradient signal is from the right Hb.d. The habenula is asymmetric in most vertebrates with the right and left having different functions. Taxis is primarily right Hb.d. The motor direction and sensory gradient are compared in R.ip.i (interpeduncular nucleus, intermediate part), which is in the basal R1. R.ip.i is primarily neuropil [Dragomir 2019] with axons and dendrites from R1.a and R.ip itself only has a relatively few neurons, a structure similar to Ob (olfactory bulb) glomeruli.

An interesting effect of this system is that only the signal valence matters, not the identity. A too-hot signal, or too-cold, or too-dark, or predator odor signal doesn’t need to be distinguished in the circuit. All of these result in avoiding the right if they increase after the animal turns right. This means that all kinds of threat signals can use the same circuit. In frogs the right Hb.d is organized around a single neuropil [Concha and Wilson 2001], suggesting that multiple senses lose their identity in the right Hb.d. Similarly, attraction can use the same system by switching left and right. The fish R.ip.v appears to have a gradient where more dorsal areas are attractive and more ventral areas are avoidant [Chen WY et al 2019].

Thigmotaxis and anxiety

Although thigmotaxis is not studied in itself, it is heavily studied as a marker for anxiety. Although anxiety research is aimed at understanding human anxiety, animal studies typically use “anxiety-like” to make clear that animal results may not match human anxiety. The main anxiety-like measures in mice are OFT (open field test), which directly measures thigmotaxis and EPM (elevated plus maze), which measures mice avoiding corridors above the ground.

Much of the anxiety study focuses on the forebrain, particularly sub-areas of P.bst (bed nucleus of the stria terminalis) and E.hc.v (ventral hippocampus), but there is significant anxiety research in the hindbrain, particularly research into nicotine addition and anxiety from nicotine withdrawal. The hindbrain areas most associated with anxiety-like behavior are Hb.m, R.ip and V.mr (median raphe).

Motor-driven taxis

The simulated thigmotaxis outlined earlier was sensor-driven: the animal’s movement was purely an output. But zebrafish studies about thermotaxis (avoiding too hot or too cold areas) suggest that the animal’s self movement drives the data collection and decision [Paoli et al 2025]. The thermotaxis circuit is movement-driven. The animal first moves to the right or the left, and only after the movement does the circuit measure change in temperature. If the fish turns to the right and heat increases, the circuit stores state about heat to the right. If the heat is too hot, the fish can turn to the left to avoid the heat.

This thermotaxis circuit needs to pieces of state. First it needs to remember that it turn to the right for a second or two, allowing a later temperature increase to show that the right side is hotter. Secondly once it has determined that the right side is hotter, it needs to store that information so it can avoid the right for a time. These two state variables are on the order of a second to a few seconds. The important thing here is that a motor efference copy drives the system. It’s a coincidence detection of the motor turn with changes in a sense like temperature.

The implementation area is in the anterior hindbrain. The motor direction state is in R1.a (anterior hindbrain) in R1.dta (dorsal tegmental area). The thermal gradient signal arrives from the right Hb.d (dorsal habenula in fish, medial habenula in mammals). The two data are combined in R.ip.i (interpeduncular nucleus, intermediate part), which is in the basal R1. R.ip.i is primarily neuropil [Dragomir 2019], [Wu et al 2024] with axons and dendrites from R1.a and Hb.d and only a relatively few neurons, similar to the structure of olfactory bulb glomeruli.

A second interesting effect of motor-driven behavior is that only the signal valence matters, not the identity. A too-hot signal, or too-cold, or too-dark, or a predator odor signal doesn’t need to be distinguished in the circuit, because all of these result in avoiding the dangerous right side. This means that all kinds of threat signals can use the same circuit. In frogs the right Hb.d is organized around a single neuropil [Concha and Wilson 2001], suggesting multiple senses lose their identity in the right Hb.d. Similarly attraction is a simple change in direction, so the bulk of the circuit can be the same. The first R.ip.v appears to have a gradient where more dorsal areas are attractive and more ventral areas are avoidant [Chen WY et al 2019].

Habenula and thigmotaxis

Research into anxiety and nicotine addition have consistently shown correlations with right Hb.d (Hb.mv in mammals), R.ip.d and anxiety-like behaviors, prominently including thigmotaxis. In studies anxiogenic (anxiety producing) or anxiolytic (anxiety inhibiting) is measured by changes in thigmotaxis in measurements like the OFT (open field test). Which raises the question of whether these studies are measuring anxiety as defined in human psychology or something else that merely resembles anxiety, but may have a different underlying purpose. Studies generally use “anxiety-like” instead of “anxiety” to make it clear that “anxiety-like” might not be the same as the normal use of anxiety. For example exploration-based task can’t distinguish anxiolytic from novelty seeking, exploration, or impulsive approach [Calhoon and Tye 2015]. Some anxiety researchers criticize using thigmotaxis tests like OFT and EPM for anxiety [Headley et al 2019]. The majority of anxiety studies are definitely measuring thigmotaxis (OFT) but may not be measuring anxiety.

For these studies, I’m treating Hb.m (Hb.d in fish), R.ip, and V.mr (median raphe) as part of a single interconnected system, with V.dr (dorsal raphe) as a possibly interconnected region.

Left Hb.d does not appear to be anxiety related [Agetsuma et al 2010], but several studies suggest right Hb.d in fish, Hb.mv in mammals as anxiety related. Hb.mv / right Hb.d are associated with ACh and in particular the nACh (nicotinic receptor) which is named after nicotine’s stimulatory effect in this region, and Hb.m and R.ip are in a center in nicotine addition and anxiety-like withdrawal symptoms [Jonkman et al 2017], [Molas et al 2017], [Pang et al 2016], [Klenowski et al 2023], [Matos-Ocasio et al 2021], [Wills et al 2022], [Zhao-Shea et al 2015]. Disabling Hb.d increases anxiety baseline [Bühler et al 2021]. Disabling of Grp151 (a genetic transcription factor) in Hb and impairs habituation to novelty [Broms et al 2017]. Disruption of Hb asymmetry in development is anxiogenic [Corradi and Filosa 2021]. Hb.m is associated with nicotine, novelty, anxiety and fear in mammals [Hashikawa et al 2020]. Disabling Hb can be anxiolytic, particularly when stressed [Jacinto et al 2017], but disabling the Hb.mv to R.ip connection can be anxiolytic, and disabling the P.ts to Hb.mv input can be anxiolytic [Okamoto and Aizawa 2013], [McLaughlin et al 2017], [Yamaguchi et al 2013]. Disabling Hb.m reduces ACh in R.ip, producing many side effects including increase in anxiety [Mathuru and Jesuthasan 2013] and failure to habituate to novel area [Kobayashi et al 2013]. Hb.mv nACh activation can be anxiogenic in nicotine mice, although with a lesser effect in naive mice [Pang et al 2016]. A reminder here that anxiogenic and anxiolytic here is always measured by thigmotaxis, in combination with non-thigmotaxis anxiety-like tests.

R.ip is highly connected with Hb.m and it is essentially defined as the target of Hb.m axons, but R.ip has an independent identity comprised of a strong connection with the anterior hindbrain is modulated by Vta. Importantly here, Vta is heterogeneous. One DA from section from Vta.pn-if (paranigral area, interfascicular) to R.ipc is anxiolytic [DeGroot et al 2020], another projection from Vta.p associated with CRF (corticotropin releasing factor peptide), associated with stress, is anxiogenic [Grieder et al 2014], [Calpari et al 2020], [Wills et al 2022]. CRF in R.ip potentiates Hb.mv to R.ip [Zhao-Shea et al 2015]. R.ip receives anxiety-modulating input from both Hb.mv and from Vta and is strong associated with anxiety produced by nicotine withdrawal [Matos-Ocasio et al 2021], [Zhao-Shea et al 2015].

V.mr (median raphe) is a major 5HT (serotonin) region, tightly connected with R.ip and with E.hc (hippocampus). Physically V.mr is adjacent to R.ip, immediately posterior and dorsal to R.ip. V.mr 5HT is anxiogenic with projections to E.hc.d [Abela et al 2020], [Andrade et al 2013]. Since many studies are highly focused on the forebrain, ascending connections are often overemphasized. More studies focus on the V.mr connections to the forebrain and few study connections to the more local hindbrain. V.mr 5HT is anxiogenic [Dos Santos et al 2015], [Ohmura et al 2014] 5HT anxiety is only R1-derived 5HT but not R2, R3/R5 [Kim et al 2009].

Although more studies report Hb.m ACh areas as anxiogenic, some studies also report Hb.l affecting anxiety. Because Hb.l does project to both V.mr and V.dr, this circuit may feed into the same circuit mentioned above, but more directed to V.mr and not to R.ip. Disabling Hb.l is anxiolytic [Cui et al 2020]. Interestingly V.lc (locus coeruleus) to Hb.l is anxiogenic [Pereira et al 2023], and anxiety is correlated with Hb.l astrocyte activation [Tan et al 2022], and V.lc and R.my (medulla) norepinephrine are strongly related to astrocyte activation.

Habenula, R.ip, and anterior hindbrain

This essay assumes that thigmotaxis is somewhere in the anterior hindbrain and strongly connected to Hb.m, R.ip.v, and V.mr. The following diagram shows current studies of relevant hindbrain connections and emphasizes an ambiguity relevant to the essay, namely the relation of R.ip.v to anterior hindbrain motor areas, particularly R2.artr.

A diagram illustrating neural connections involving the habenula (Hb.m), interpeduncular nucleus (R.ip), and median raphe (V.mr), indicating potential links in anxiety and navigation-related circuits.
The medial habenula to interpeduncular nucleus circuit, which this essay uses as a possible location for thigmotaxis. Hb.m (medial habenula), R1.a (anterior hindbrain), R2.artr (anterior hindbrain turning region), R.ip.d (interpeduncular nucleus, dorsal), R.ip.v (R.ip, ventral), V.mr (median raphe).

R.ipd and R1.a are connected to form a head direction circuit [Petrucco et al 2023], [Petrucco 2024] and landmark navigation [Lavian et al 2024]. This sub circuit does not appear to be anxiety or thigmotaxis because R.ip.d and Hb.md (left Hb.d) are not associated with anxiety, in contrast to Hb.mv (right Hb.d) and R.ipv, which are strongly associated with anxiety and thigmotaxis.

R.ip.v is strongly correlated with chemotaxis [Chen WY et al 2019], thermotaxis [Palieri et al 2024], [Paoli et al 2025], and OMR [Dragomir et al 2020] and necessarily needs to connect with motor regions [Wu et al 2024].

R2-R3 ARTR (anterior hindbrain turning region) is strongly associated with turning direction [Chen X et al 2018], [Dunn et al 2016], and phototaxis [Karpenko et al 2020], [Wolf et al 2017], and OMR [Chen X et al 2018], [Naumann et al 2016].

However, none of the R2.artr studies mention any connection with R.ip.v or V.mr, and none of the R.ip.v studies mention R2.artr. While is seems plausible that R2.artr and the unnamed R1.a motor area are the same area, but the science doesn’t say anything at all, neither confirming the identity as R2.artr with the unnamed R.ip pair or establishing a separate anterior hindbrain area. For the sake of the essay and simulation, I’m treating R2.artr as being the partner of R.ip.v, because that option is simpler, with fewer moving parts.

Discussion

Here I’ve approached thigmotaxis primarily as a navigation strategy, adding to earlier essays that used random walk and target seek and avoid (taxis) that previous essays have used. Here the wall-following is a strategy that reduces search from a two dimensional problem to a one dimensional problem. In addition it increases the time spent searching near wall-like areas as like a reef in coastal water, which may have been important to proton-vertebrates as they searched for filter-feeding locations.

However scientific studies don’t currently study thigmotaxis as a separate behavior, which makes this essay particularly speculative. Essentially all of the information about thigmotaxis is from studies that use thigmotaxis as a measure of anxiety. Because anxiety is a major research topic, thigmotaxis has a large amount of indirect research. In a sense it’s a well-studied topic, but that research doesn’t cover how the motor circuit for thigmotaxis works.

From the other direction, there is significant research for locomotion for seeking and other taxis [Palieri et al 2024], random walks [Dunn et al 2016], klinotaxis [Karpenko et al 2020], optic-flow locomotion [Chen X et al 2020], and details on swimming primitives like enumerating several swimming types and turn types [Marques et al 2018]. But I haven’t found a study that treats thigmotaxis as a locomotion primitive that needs explaining.

Because thigmotaxis can be implemented fairly simply using the lateral line with some short-term memory, both of which are available in the hindbrain, and because the anterior hindbrain Hb.m / R.ip / V.mr system is an anxiety (thigmotaxis) center, placing thigmotaxis in the anterior hindbrain seems reasonable. Recent research has started to explain anterior hindbrain locomotion [Paoli et al 2025], [Dragomir et al 2020], [Naumann et al 2016]. However there appears to be two lines of research, one centered on the Hb / R.ip circuit and another studying the R2.artr circuit, but I haven’t yet found a study that connects the two lines of research, which makes it unknown whether the Rb – R.ip and R2.artr are two separate circuits or part of a single circuit. If they’re two adjacent circuits, then presumably they communicate, but this is also unknown. Again the essay simulation needs to make a decision in the absence of scientific data. Because treating the two circuits as one larger circuit is simpler, the essay uses that model.

If thigmotaxis is part of a search strategy: reducing search dimensionality from two to one, then some of the ascending connections from this circuit, including from V.mr, R.dtg, and R.nin (nucleus incepts, a target of R.ip) to E.hc (hippocampus) could be spatial and navigational, not just anxiogenic. Lesions to those connections produce spatial navigational deficits in tests like the Morris water maze.

Although this essay has focused on anxiety studies that target the hindbrain, there are many studies that show forebrain anxiety circuits. In particularly P.bst.ov (bed nucleus of the stria terminals, oval nucleus), part of the extended amygdala and E.hc (ventral hippocampus) are strong anxiety-like centers [Han et al 2024]. Furthermore the combination of E.hc.v, A.bl (basolateral amygdala), and F.m (medial prefrontal cortex) [Padilla-Coreano et al 2016] is also a strong anxiety-like center. Again where “anxiety-like” is measured as modulating thigmotaxis. R.ip – V.mr are anxiety-related, but not directly implementing the thigmotaxis motor action.

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