Essay 36: Parabrachial as Tunicate Brain

Previous essay 23 (feeding and neuropeptide core) and essay 27 (feeding state machine) covered feeding, but were not based on the ascidian tunicate brain. After studying tunicates in essay 30 (RTPA – real time place avoidance), I think using the adult ascidian brain is a better foundation. The earlier essays chose the center of feeding at H.l (lateral hypothalamus), which is a foraging locomotion center, but this essay centers feeding around eating in R.pb (parabrachial). Where R.pb is centered around eating, tasting, and digestion, H.l is centered of seeking and locomotion. Because adult ascidians are sessile, they have no locomotion, but they do eat by filter feeding, suggesting that the eating functions in R.pb are more fundamental to the feeding process than the locomotive foraging.

Adult ascidian

The adult ascidian tunicate (specifically Ciona “sea squirt”) is a sessile filter feeder. Like other chordates, ascidian filter feeding uses pharyngeal slits, which developed into gills for vertebrates, and later into the jaw. The ascidian larva phase is only 24 hours and can swim like vertebrates, using phototaxis and geotaxis to find an appropriate permanent settling place. The adult ascidian brain dissolves the larva navigation areas and expends the “neck” of the larva brain, between the sensory ganglia and the motor ganglia [Gigante et al 2023].

Rough description of the adult ascidian Ciona brain.

The adult ascidian brain is marked by the Phox2 genetic transcription factor [Gigante et al 2023], which corresponds to specific vertebrate hindbrain areas. In vertebrates Phox2b corresponds to much of the hindbrain, including N5 (trigeminal), N7 (facial), N10 (vagus), N11 (accessory) nerves, R.nts (nucleus of the solitary tract), and R.na (nucleus ambiguous). The vertebrate Phox2a corresponds to V.lc (locus coeruleus – norepinephrine), N3 (oculomotor), and N4 (trochlear) nerves [Dufour et al 2006]. To put it another way, the branchial (pharyngeal) motor neurons are a distinct group consisting of N5, N7, N9 (glossopharyngeal), N10, and N11 [Fritzsch et al 2017].

The Phox2b nuclei essentially match the parasympathetic system:

  • N5 – trigeminal – jaw, chewing, face and mouth
  • N7 – facial – facial expressions and taste in tongue
  • N9 – glossopharyngeal – taste in tongue, swallowing, blood pressure
  • N10 – vagus – heart, breathing, digestion, etc.
  • N11 – accessory – shoulder and neck
  • R.nts – nucleus of the solitary tract – visceral and taste sensorimotor
  • R.na – nucleus ambiguous – speech, swallowing, cardiac

Note that the jaw develops from the first pharyngeal arch, and the pectoral girdle (shoulder and neck) may develop from the last pharyngeal arch [Brazeau et al 2023].

The Phox2a nuclei are:

  • N3 – oculomotor – most eye movement
  • N4 – trochlear – additional eye movement
  • V.lc – locus coeruleus – main source of norepinephrine

Because the ascidian adult brain is necessarily self-contained, corresponding to a restricted set of hindbrain ganglia, it’s a good center module for vertebrates, as a thought experiment. However, it’s important to remember that tunicates are highly divergent from the original vertebrate/tunicate ancestor and trying to derive that ancestor from ascidians is extremely suspect [Holland 2015].

R.pb parabrachial nucleus

For the sake of the simulation, I’m combining R.pb with associated nuclei like R.nts, R.na, and R.plc (pre locus coeruleus). Science research needs to distinguish the nuclei, of course, but complicating the essay’s model wouldn’t add much verisimilitude.

R.pb is a highly heterogenous area [Pauli et al 2022] with at least 36 gene expression clusters [Nardone et al 2024]. Its neurons derive from two distinct progenitor populations marked by transcription factors lmx1b and foxp2 [Karthik et al 2022]. The lmx1b population projects to the Phox2b hindbrain population, S.a (central amygdala), P.bst (bed nucleus of the stria terminalis), H.pstn (presubthalamic nucleus), T.vpm (thalamus gustatory), and C.i (insular cortex). The foxp2 population projects to hypothalamic area Poa (preoptic area), H.l (lateral hypothalamus), and H.vm (ventromedial hypothalamus).

R.pb parabrachial descending projections are to Phox2b hindbrain nuclei. N5 (trigeminal), R.my (medulla), R.nts (nucleus of the solitary tract), R.pb (parabrachial nucleus).

Many R.pb populations transform short stimuli (10ms) into long effects, often to suppress feeding. For example an experimental 10s tail shock suppresses feeding for 30s to 60s using intracellular mechanisms including cAMP and PKA, which suppressed licking but not suppress locomotion [Singh Alvarado et al 2024]. In R.pb, cAMP half life was 33s. Other areas like Po.m (medial preoptic area) with extended firing have longer decay times.

Sleep, wake, and breathing

The R.pb area, particularly around R.pb.m (medial R.pb) and including the neighboring V.lc, is one of the most critical wake areas. If the area is lesioned, the animal can become comatose [Fuller et al 2011]. R.pb astrocytes promote wakefulness [Liu PC et al 2023], and R.pb stimulation wakes from anesthesia [Luo et al 2018]. R.pb to H.l strongly correlates with H.l orexin neurons, which are wake promoting [Huang et al 2021]. R.pb is strongly connected with P.bf (basal forebrain), which manages cortical arousal [McKenna et al 2021]. R.pb’s neighboring R.sld (sublaterodorsal nucleus) is responsible for REM atonia [Peever and Fuller 2016]. The nearby R.pz (parafacial zone) suppresses R.pb to promote sleep [Anaclet et al 2014].

R.pb is also strongly associated with breathing, and the Phox2b region of the hindbrain is required for breathing [Dutchemann and Dick 2012]. Because vertebrate gills and lungs developed from the earlier filter-feeding pharyngeal arches, breathing is a natural extension of the earlier feeding function.

Malaise: LPS and CGRP

Proto-vertebrate filter feeding includes feeding on bacteria, but some bacteria are toxic. LPS (lipopolysaccharide) is a marker for bacterial inflammation [Essner et al 2017], immediately halts feeding in mice, and is often used in behaviorist training for CTA (conditioned taste aversion) [Palmiter 2018], [Parker 2003]. The LPS sensors are in the gut, travel through N10 to R.nts and to R.pb using the CGRP peptide marker [Campos et al 2016]. The R.pb.cgrp (CGRP R.pb neurons) halt eating [Carter et al 2013] and produce CTA (conditioned tasted aversion) [Carter et al 2015].

Sickness inhibition of eating. R.nts.r (rostral nucleus of the solitary tract), R.pb.el (external lateral parabrachial nucleus).

Importantly, note that R.pb neurons are almost entirely glutamate. Although the limitation of lacking inhibition doesn’t matter yet, it will become important soon and motivate the H.arc (arcuate hypothalamus) and S.am (central medial amygdala). So, even though the effect of R.pb.cgrp is to stop eating, R.pb is an active command to stop eating, not an inhibition gating an eating action. I’m assuming eating defaults to enabled, which may make sense for a filter feeder. Alternatively, the eating motor neurons in the Phox2b area may have additional requirements such as food touching the lips via N5 (trigeminal). In the above diagram R.nts.lps is only active when the gut sensors detect LPS, when then triggers R.pb.cgrp, which stops eating.

In the case of LPS, which is essentially food poisoning, the animal might trigger vomiting to remove the toxins from the but, may want to avoid the area to stop filter feeding the disease, and when learning is available to learn some signs to avoid getting sick again.

On review of this section, although LPS is a trigger for R.pb CGRP, much of this discussion applies to LiCl, which is a distinct gut warning peptide. A later essay should clarify when LPS and LiCl can be treated as equivalent and when they need to be distinguished.

Gut satiation: CCK and oxytocin

Satiation also suppresses eating. Like LPS, satiation stops eating or drinking, but unlike LPS, it’s not a negative effect. In fact if the animal is pleasantly full, it might remember the area. CCK is a gut peptide that marks the gut as being full and can also be a nutrient sensor [Palmiter 2018]. In mammals, oxytocin signals a thirst satiation. If the animal it’s thirsty it doesn’t drink.

Satiation suppresses eating and drinking via R.pb. H.pv (periventricular hypothalamus), OXT (oxytocin), R.nts (nucleus of the solitary tract), R.pb (parabrachial)

H.pv (paraventricular hypothalamus) also produces satiety signals. H.pv MC4 and H.pv dyn neurons each produce 50% of H.pv satiety [Li MM et al 2019]. The H.pv targets are distinct from R.pb CGRP.

Bitter tastes

For safety animals taste food before eating because it’s inefficient and dangerous to detect bad food only after developing food poisoning. In mice bitter tastes stimulate R.nts.r, which drives orofactial expressions like “gaping” by the N9 (glossopharyngeal) motor complex [Kinzeler and Travers 2008]. Because mice can’t vomit, rejecting dangerous-tasting food is particularly important. R.nts.r also detects sweet tastes and produces positive orofacial expressions like licking [Roussin et al 2012]. At a higher level bitter taste activates R.pb.el CGRP neurons, which feeds into the eating termination circuitry used by LPS detection.

Bitter response circuitry in R.pb. R.nts bitter tastes excite R.pb CGRP neurons which stop eating. H.arc AgRP hunger can suppress bitter or neophobia. H.arc (arcuate hypothalamus), N9 (glossopharyngeal nerve), R.nts (nucleus of the solitary tract), R.pb (parabrachial), AgRP (hunger peptide), CGRP (alarm peptide).

Interestingly, these two orofacial expressions — gaping and licking — are used as signs of hedonic pleasure in studies of the basal ganglia, which distinguish motivation from pleasure [Berridge 2019].

Hunger: “homeostatic feeding”

Until now I’ve assumed eating as a default activation with R.pb as a brake to stop eating, whether from toxins or satiation, but vertebrates are positively motivated by hunger, such as the AgRP hunger peptide produced by H.arc (arcuate hypothalamus). If the H.arc AgRP neurons are inhibited, mice will starve [Roman et al 2016]. This anorexia can be reversed if the R.nts CCK satiety neurons are also disabled [Roman et al 2016].

Hunger from H.arc suppresses neophobia and bitter to disinhibit eating. AgRP (hunger peptide), H.arc (arcuate hypothalamus), CCK (gut satiation peptide), CGRP (alarm peptide), R.nts (nucleus of the solitary tract), R.pb (parabrachial)

The above diagram shows the system of hunger disinhibiting eating by suppressing neophobia, gut satiation and bitterness. By default R.nts CCK neurons tonically activate R.pb.el CGRP neurons, which disables eating. When the animal is hungry, H.arc AgRP neurons suppress the tonic food inhibition from R.pb CGRP neurons, letting the animal eat. This system is also used for food neophobia, where the animal won’t eat a new food until it’s known to be safe [Campos et al 2018], [Palmiter 2018].

The hunger signal can be circadian; it’s not necessarily triggered by low energy stores. For example rodents typically forage as soon as they’re awake [Blum et al 2014]. The system doesn’t need to wait until the animal is starving with low blood sugar before eating. Along with circadian input, the H.arc neurons are modulated by several factors including signals for fat availability (leptin) [Andermann and Lowell 2017].

Note that this system allows for the combination of “not hungry” with “not sated.” If the animal doesn’t have AgRP (not hungry) but also not CCK (not sated), it will still not eat because of the default R.pb inhibition. This “homeostatic feeding” allows for a high quality “hedonic feeding,” where the animal will eat rich food (typically sugar or fat) if it finds some, but won’t fill itself with low quality food beyond what is necessary to stop hunger [Tang et al 2022].

Sweetness: hedonic feeding

After the animal has satisfied its base hunger, it might still eat if it can find some rich food (sweet or fatty). There’s always room for dessert. If high quality rich food is unavailable, circadian or hunger-driver feeding will keep the animal from starving. Once the animal avoids minimal starvation, it can afford to search for better food sources. After nibbling the food, the animal will only eat if it’s sweet or savory.

Sweetness as disinhibiting satiation or bitterness. CGRP (alarm peptide), M.dp (deep midbrain), N9 (glossopharyngeal nerve), R.nts (nucleus of the solitary tract), R.pb (parabrachial), S.am (central medial amygdala), SST (somatostatin peptide)

In the diagram above, sweet tastes inhibit the R.pb CGRP neurons, allowing the animal to eat when not hungry but also not sated. R.pb sweet taste neurons are marked by satb2 [Fu et al 2019]. R.pb satb2 neurons project to S.am (central medial amygdala) [Jaramillo et al 2021], [Jarvie et al 2021]. S.am (somatostatin) neurons also directly project to M.dp (deep midbrain reticular) to lick after tasting sweet [Zheng D et al 2022]. Ethanol can act like sweet tastes to increase drinking via S.am nts (neurotensin) to R.pb [Torruella-Suárez et al 2020].

Note that this diagram doesn’t show the only source of sweet motivation. The adjacent R.plc (pre locus coeruleus) nucleus can also drive eating for sweet tastes. Inhibition of R.plc glutamate neurons will eat sweet [Gong et al 2020]. Like R.pb, R.plc has a long duration effect. Inhibiting R.plc extends eating for approximately 15s.

Note [Jaramillo et al 2021] report that all R.pb to S.a / P.bst express CGRP or PACAP. In contrast [Jarvie et al 2021] report R.pb.satb2 to S.am.

R.pb S.a CGRP alarm

An animal needs to interrupt its eating when it’s alarmed, whether a problem from an environmental threat such as high heat, CO2, itch, injury, or pain from eating, such as capsicum from a pepper. R.pb CGRP neurons serve as a general alarm, which stops eating [Campos et al 2018], [Jaramillo et al 2019].

S.a threats as suppressing S.a sweetness to stop eating. CGRP (alarm peptide), LPS (sickness peptide), M.dp (deep reticular midbrain), N.sp.l1 (layer 1 spinal cord), N9 (glossopharyngeal), pkcδ (gene marker for S.al halting), R.nts (nucleus of the solitary tract), R.pb (parabrachial)

The above diagram adds pain and alarm eating suppression to the top of the previous S.am diagram. This diagram only shows two R.pb.el CGRP inputs, but other inputs also feed into the R.pb.el CGRP neurons, including N5 (trigeminal) pain sensors for the jaw and mouth [Campos et al 2018], [Carter et al 2013], [Palmiter 2018].

Note the similarity between the S.al and S.am circuit and the Sv.d2 (ventral striatum D2 neurons) and Sv.d1 (ventral striatum D1 neurons) circuit. Some definitions of the external amygdala include S.msh (medial shell of the ventral striatum) along with P.bst (bed nucleus of the stria terminalis.)

Consensus loops

Before the circuits become too complicated, let’s step back to explore how to manage the complexity. The problem of complexity will quickly multiply in this essay as it covers more modules that each modulate eating. Essay 30 RTPA (real time place avoidance) ran into the same problem and added a notion of a consensus loop, where multiple independent, distributed drives voted continually to decide on an action.

Consensus voting model to select a drive to motor action.

The above diagram shows the essay 30 consensus voting model. Instead of a single action path from stimulus to motor, a set of drives and actions consult each other in a mutually-inhibited winner-take-all system to choose an action. In this essay’s motivation for feeding, it may be simpler to consider the consensus system as managing a number of shared peptides, instead of drawing ever more complicated diagrams. This model resembles the old notion of an “isodendritic core,” which included areas like R.pb, H.l and similar reticular areas [Ramón-Moliner and Nauta 1966], [Agnati et al 2010], where broadcast transmission of peptides is more important than axon synaptic connectivity.

Another model for managing action selection uses diffusion models and Langevin dynamics to describe complex distributed choice in the brainstem [Richman et al 2023]. In their experiment where mice are both hungry and thirsty, the mice choose water or food rewards in a sticky, stochastic manner, choosing water rewards several times in a row before switching to food and then switching back. The brainstem regions in that study’s choice are highly distributed with over 10 regions providing significant management, without any one region serving as a central decision hub.

Weak attractor, diffusion model showing the stochastic, sticky action selection. The choice sticks to a shallow attractor basin, which is weak enough to allow for switching to the other basin..

The above diagram shows the eat vs drink decision as a weak stochastic attractor model. The choice switches between two shallow attractor basins. Because the forces on the choice are stochastic, the choice switches between basins, but stays in a particular basin for a short time. Other models might stick to one choice in a winner-take-all model or switch consistently in an oscillator model.

Going forward in this essay, consider each new module as contributing to a shared consensus decision as opposed to considering the model as a strict connection circuit.

H.pstn hunger and eating suppression

H.pstn (presubthalamic nucleus) is part a part of H.l directly focused on eating, in contrast to the H.l focus on waking, arousal, exploration, and seeking. H.pstn is more responsive to rich food than plain food, part of the hedonic eating as opposed to homeostatic hunger [Chometton et al 2016]. H.pstn is strongly connected with S.a and P.bst and is the main H.l target of S.a [Shah et al 2022].

H.pstn rich food circuit, as a parallel and connected circuit to S.am. H.pstn (presubthalamic nucleus), pkcδ (central amygdala aversive marker), R.nts (nucleus of the solitary tract), R.plc (pre locus coeruleus), R.pb (parabrachial), S.al (lateral central amygdala), S.am (medial central amygdala), SST (S.a attractive marker)

The above diagram shows some of the H.pstn connectivity, focusing on its connections to R.pb and S.a. R.plc was mentioned previously for rich food. H.pstn connections include P.ipac (interstitial nucleus of the posterior limb of the anterior commissure), P.si (substantia innominata aka ventral pallidum), P.bst, T.pv (paraventricular thalamus), R.m5 (trigeminal motor nucleus), R.pz (parafacial zone), R.nts, R.dmv (dorsal motor of vagus nerve). H.pstn also receives input from F.ai (granular insular cortex), H.pv, M.pag.v (ventral periaqueductal gray), R.plc [Shah et al 2022]. In other words H.pstn has many connections and can also directly drive hindbrain eating motor areas.

Because S.a is a GABA nucleus and H.pstn is primarily glutamate, the two areas may work synergistically [Shah et al 2022]. Because S.a, P.bst, and H.l GABA neurons cluster into a genetically related group [Yao et al 2023], an ancestral vertebrate may have had a combined S.am and H.l GABA with H.pstn and H.l glutamate. This H.pstn connection is a reason to consider the consensus loop model because trying to model it more precisely is getting into the weeds.

S.v and taste

Taste in S.v (ventral striatum) can drive eating is parallel with the S.a (central amygdala) system. S.v is a heterogenous system, not only with core, lateral shell and medial shell, but S.msh (medial shell) is itself highly heterogenous [Castro et al 2015], [Chen R et al 2021]. The S.v taste connectivity is more specialized and uses different connectivity than the canonical basal ganglia connectivity.

S.v taste and eating extension. DA (dopamine), GLP-1 (sickness peptide), R.ap (area postrema), R.my (medulla), R.nts (nucleus of the solitary tract), R.pb (parabrachial), Sv (ventral striatum), Vta (ventral tegmental area)

The above diagram shows some Sv connectivity to R.pb, R.nts, R.my, and R.ap (area postrema). A sweet taste drives the Sv.d1 (Sv projection neuron with D1 receptor) neuron to extend eating. The companion Sv.d2 (Sv projection neuron with D2 receptor) suppresses eating directly to R.nts, and suppresses the Sv.d1 eating extension. [Sandoval-Rodríguez et al 2023]. As with S.v, adenosine quickly times out the Sv.d1 path and enables the Sv.d2 path. This might allow for a hesitant lick to taste, preventing full eating. If the taste is sweet, then DA (dopamine) is activated via Vta (ventral tegmental area), and the DA potentiates the Sv.d1 path and suppresses the Sv.d2 path, which will extend eating.

Ignoring dopamine for a moment, the above Sv functionality is similar to Sa functionality, where Sv.d1 promotes eating with sweet taste, like S.am extends eating for sweet taste. Similarly, Sv.d2 suppresses eating for GLP-1 (LPS peptide marker), like S.al suppresses eating for R.pb CGRP alarms. As essay 31 explored, adenosine in S.v can timeout Sv-enabled actions. Without extra domaine, the sweet taste only allows for a minimal extension of eating.

R.pb directly drives Vta for DA to S.v, either enhancing DA for sweet taste or inhibiting for food shocks [Coizet et al 2010], [Han W et al 2018], [Nagashima et al 2023], [Tsou et al 2023]. Looking at the diagram above, enhancing DA extends eating by encouraging the Sv.d1 path, while suppressing DA curtails eating by encouraging the Sv.d2 path.

R.pb S.msh

Let’s return to the S.v modulation of taste and eating. Earlier, sweet tests drove DA to extend eating by driving the S.v.d1 path that extends eating, but an alarm while eating the sweet food should curtail eating.

Alarms suppress dopamine to curtail eating. A CGRP alarm drives RMTg to suppress Vta dopamine, forcing a stratum timeout. CGRP (alarm peptide) DA (dopamine), R.ap (area postrema), R.nts (nucleus of the solitary tract), R.pb (parabrachial), RMTg (rostromedial tegmental nucleus), Sv (ventral striatum), Vta (ventral tegmental area).

The above diagram extends the previous circuit by suppressing dopamine for an alarm, such as sickness to suppress sweet taste. An alarm drives R.pb.el, which drives Vta.rmtg (rostromedial tegmental nucleus) to suppress Vta [Coizet et al 2010], which suppresses dopamine, which forces a timeout of the striatum circuit, driving the Sv.d2 path to suppress eating.

The Vta.rmtg path has another interesting input from the R.pb sweet neurons. R.pb sweet drives P.ms.g SST (median septum somatostatin, which inhibits Hb.l (lateral habenula) to inhibit the tonic suppression of Vta.rmtg [Shen et al 2022]. In short, R.pb sweet disinhibits Vta DA through the P.ms.g to Hb.l path.

Median septum sweet-promoting path. A sweet taste drives P.ms.g SST neurons, which disinhibits Vta through the Hb.l to Vta.rmtg path. DA (dopamine), Hb.l (lateral habenula), P.ms (median septum), R.pb (parabrachial), RMTg (rostromedial tegmental nucleus), S.core (ventral striatum core), Vta (ventral tegmental area)

Because Hb.l glutamate neurons are tonically active, providing a midpoint suppress of Vta DA, Hb.l can be driven in either direction to increase or decrease DA.

Poa temperature

The Poa (preoptic area) has many functions, but the function most directly connected to R.pb is temperature defense. R.pb sends both too hot and too cold signals to Poa, which responds to temperature for multiple coping methods including vasoconstriction and vasodilation, and thermotaxis to leave the too hot or too cold area [Norris et al 2021], [Yahiro et al 2017].

Temperature modulation in the preoptic area driven by parabrachial signals. Hb.m (medial habenula), Poa (preoptic area), R.ip (interpeduncular area), R.pb parabrachial.

Pain

R.pb is a center of sustained pain, as opposed to sharp, acute pain. To keep this essay from growing out of control, I’ll not dive too deeply into the details. For simplicity I’ll treat pain as just another input to the R.pb.l.cgrp input. This pain R.pb.l CGRP signal then activates S.al and P.bst, which curtails eating.

R.pb to hypothalamus

There seems to be three distinct R.pb to hypothalamus connections: eating, pain avoidance, and waking / seeking. As mentioned above H.pstn is highly concerned with eating, particularly rich food and is highly connected with S.a, which has similar connectivity and activation [Chometton et al 2016]. Because S.a is primarily GABA and H.pstn is primarily glutamate, their connectivity may be synergistic. R.pb has a strong connectivity with the H.l orexin neurons for wake and seeking, complementary with the R.pb role in sleep and wake.

Essay model

I’ve chosen to group eating-related areas functionally as opposed to anatomically. BodyEat represents physical body simulation, such as a short digestion delay in the gut and accumulating glucose as the food digests. HindEat includes the Phox2b hindbrain areas including R.nts, R.ap and the branchial derived motor nerves N5 (trigeminal), N7 (facial), N9, N10 (vagus), and N11. MotiveEat includes R.pb eating-related areas, S.am eating, S.al bitter / sickness response, H.pstn rich food, and also includes S.v taste response.

A different model might make each anatomical area into its own module, such as a module for R.pb or split into finer R.pb.l and R.pb.m. However, that approach would run quickly into the issue of module boundaries, particularly because R.pb is more organized by genetic clusters than anatomical boundaries. As important, spliggin modules between R.pb, S.a, H.arc, H.pv, and H.pstn would obscure the shared functionality.

Essay simulation modules

HindMove includes reflexive orofacial movements such as eating (licking), vomiting, and gaping, which is a rodent facial expression functionally equivalent to spitting food out. These behavior are equivalent to R.nts triggering of orofacial movement.

MotiveEat does not include foraging locomotive decisions, such as seeking toward an odor plume, roaming search, and avoidance. When the animal tries to eat a bitter food, it not only stops eating and initiates gaping, but it needs to reverse foraging and avoid the current area to prevent a return to the same bad food patch.

Simulation

The essay simulation expands food items into multiple kinds: plain, bitter, sweet, and sickness. The diagram below shows the setup. The different star colors show the food kinds: red for sweet, orange for plain, and yellow for bitter. Because odors are not distinct, the animal can’t predict the kind of food until eating it.

Simulation screenshot showing the animal avoiding a bitter food area.

An immediate problem in the simulation was bitter food causing a freeze, because the initial implementation stopped eating, and produce gaping, but didn’t avoid the area. Because avoidance never triggered, the animal never left the bitter area. To fix that problem, a bitter taste triggers a general alarm to avoid the current area.

Because sweetness and sampling before eating when the animal is no longer hungry turns out to be relatively complicated, I’ve postponed the implementation because it’s not clear how sampling works. For example it may require Sv or Sd to quickly halt eating, possibly using adenosine as in essay 31. But adding that striatum complexity would derail the current R.pb focus.

Discussion

The main idea of the essay is to pub R.pb in the center of feeding and even as a seed at the center of vertebrate behavior. That center is a seed to build more complicated behavior around. The justification for this idea is an analogy with the ascidian adult brain, which only controls filter feeding and visceral activity such as digestion, respiration, and heart rate. The common vertebrate and tunicate ancestor probably didn’t have the ascidian degenerate brain, but high competition in the Cambrian may have forced a bottleneck with a smaller, focused brain.

This approach has a large advantage of organizing many distributed systems. S.am and S.al make sense as managing R.pb taste and eating with inhibition. H.pstn and S.am manage eating rich food beyond foraging for plain food. H.arc and H.pv manage eating by modulating R.pb CGRP inhibition, driven in part of circadian drives. P.bst, H.l, and Hb.l manage the avoidance of food, driven by R.pb bitterness or sickness signals.

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Essay 27: model refactoring

The model required a major refactoring to properly simulate the essay.

Model update to simulate essay 27.

HindMotor

HindMotor includes the motor command areas in the hind-brain with locomotion and eating as separate modules. Locomotion models B.rs (reticulospinal motor command neurons) and B.mdd (medulla reticular neurons). Eating models parts of B.pb (parabrachial nucleus), B.nts (nucleus of the solitary tract) and B.mdd. The locomotion and eating modules do not coordinate at the hind-brain level for this model.

In this essay, HindMotor controls the random search, modulated by upstream request, and also manages action bouts. One an action starts, it continues until complete, which generally requires several simulation ticks. Because the essay model is real-time, not turn-based, actions require several simulation ticks to complete.

HindMotor locomotion commands are split between directional hints and forward movement hints, following a similar division in vertebrates. Turn modulation comes from target seeking and obstacle avoidance, either encouraging or inhibiting left vs right turns. Forward movement modulation comes from the motive core, specifically selecting between a roaming search or an area-restricted dwelling search.

MidMotor

MidMotor coordinates actions that HindMotor implements. MidMotor with sustains actions across action bouts, and manages the transition between action bouts. Because ongoing movement needs to stop before eating, MidMotor pauses eating until the animal stops.

MidMotor represents Ppt (predunculopontine nucleus), H.stn (subthalamic nucleus), OT.d (deep optic tectum), MLR (midbrain locomotor region), and T.pf (parafascicular nucleus). For this essay, Ppt and H.stn work together as a single module to sustain actions and pause upcoming actions until currently-active actions are complete.

Seek

The essay Seek is directional movement toward a specific target, the same idea as taxis (but avoiding Greek). Seek is only active with a specific directional cue, here an olfactory gradient.

Seek models Hb.m (medial habenula) and M.ip (interpeduncular nucleus), where M.ip is models as a gradient seek module like the Drosophila fan-shaped body.

CoreMotive

CoreMotive simulates the motivational core, which is primarily peptide based. In this essay, the neural areas include H.l (lateral hypothalamus), V.dr (dorsal raphe), and B.pb (parabrachial nucleus). H.l is strongly associated with all aspects of feeding and is the driving controller. V.dr expresses the dwell state, which restricts search to a small area once the animal has found food. B.pb manages eating, taste, and physical alarms that might interrupt eating.

Motive neuropeptides

Because the motive core is more broadcast neuropeptide-based than a connective circuit, the simulation includes broadcast neuropeptides as primitive motives. In this essay, the key motives are Roam (motivation to search for food, orexin), Dwell (area restricted search, serotonin), Seek (tracking a target, dopamine) and Sated (antagonizing all food search, GLP-1).

Each motive is a DecayValue, which represents a slow leaky integrator, where the decay time can be tens of seconds or longer, because neuropeptide timing can be long. To a Dwell signal might last for 20 seconds or more without requiring recurrent neural behavior to maintain the state. Since these Motives are broadcast, they can modulate any module with requiring a direct connection.

Screenshot after eating, showing multiple active motives.

The screenshot above shows several motives after the animal eats, where emojis represent the active motives. The animal is sated (pid), eating is fading (faded fork and knife), search is in dwell (magnifying glass) because the animal has just eaten, and it’s still roaming (footprints).